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Journal Publications

Journal Articles published in 2021
Journal Articles published in 2020
Journal Articles published in 2019
  • Agrawal, Deepak K., Marshall, Ryan, Noireaux, Vincent, Sontag, Eduardo D (2019). In vitro implementation of robust gene regulation in a synthetic biomolecular integral controller. Nature Communications, 10(1). 10.1038 / S41467-019-13626-Z
  • Ali Al-Radhawi, M., Del Vecchio, Domitilla, Sontag, Eduardo D. (2019). Multi-modality in gene regulatory networks with slow promoter kinetics. PLoS Computational Biology, Jan.(2), e1006784. 10.1371 / JOURNAL.PCBI.1006784
  • Anderson, Christian E., Johansen, Mette, Erokwu, Bernadette O., Hu, He, Gu, Yuning, Zhang, Yifan, Kavran, Michael, Vincent, Jason, Drumm, Mitchell L., Griswold, Mark A., Steinmetz, Nicole F., Li, Ming, Clark, Heather, Darrah, Rebecca J., Yu, Xin, Brady-Kalnay, Susann M., Flask, Chris A. (2019). Dynamic, Simultaneous Concentration Mapping of Multiple MRI Contrast Agents with Dual Contrast - Magnetic Resonance Fingerprinting. Scientific Reports, 9(1). 10.1038 / S41598-019-56531-7
  • Anikeeva, Polina, Boyden, Edward, Brangwynne, Clifford, Cissé, Ibrahim I., Fiehn, Oliver, Fromme, Petra, Gingras, Anne-Claude, Greene, Casey S., Heard, Edith, Hell, Stefan W., Hillman, Elizabeth, Jensen, Grant Jay, Karchin, Rachel, Kiessling, Laura L., Kleinstiver, Benjamin P., Knight, Rob, Kukura, Philipp, Lancaster, Madeline A., Loman, Nicholas, Looger, Loren, Lundberg, Emma, ​​Luo , Qingming, Miyawaki, Atsushi, Myers, Eugene W., Nolan, Garry P., Picotti, Paola, Reik, Wolf, Sauer, Markus, Shalek, Alex K., Shendure, Jay, Slavov, Nikolai, Tanay, Amos, Troyanskaya, Olga, van Valen, David, Wang, Hong-Wei, Yi, Chengqi, Yin, Peng, Zernicka-Goetz, Magdalena, Zhuang, Xiaowei (2019). Voices in methods development. Nature Methods, 16(10), 945-951. 10.1038 / S41592-019-0585-6
  • Bersi, Matthew R., Bellini, Chiara, Humphrey, Jay D., Avril, Stéphane (2019). Local variations in material and structural properties characterize murine thoracic aortic aneurysm mechanics. Biomechanics and Modeling in Mechanobiology, 18(1), 203-218. 10.1007 / S10237-018-1077-9
  • Bocci, Federico, Gearhart-Serna, Larisa, Boareto, Marcelo, Ribeiro, Mariana, Ben-Jacob, Eshel, Devi, Gayathri R., Levine, Herbert, Onuchic, José Nelson, Jolly, Mohit Kumar (2019). Toward understanding cancer stem cell heterogeneity in the tumor microenvironment. Proceedings of the National Academy of Sciences of the United States of America, 116(1), 148-157. 10.1073 / PNAS.1815345116
  • Bocci, Federico, Tripathi, Satyendra C, Vilchez Mercedes, Samuel A, George, Jason T, Casabar, Julian P, Wong, Pak Kin, Hanash, Samir M, Levine, Herbert, Onuchic, José N, Jolly, Mohit Kumar (2019). NRF2 activates a partial epithelial-mesenchymal transition and is maximally present in a hybrid epithelial / mesenchymal phenotype. Integrative Biology, 11(6), 251-263. 10.1093 / INTBIO / ZYZ021
  • Bocci, Federico, Levine, Herbert, Onuchic, José N., Jolly, Mohit Kumar (2019). Deciphering the Dynamics of Epithelial-Mesenchymal Transition and Cancer Stem Cells in Tumor Progression. Current Stem Cell Reports, Jan.(1), 11-21. 10.1007 / S40778-019-0150-3
  • Cai, Hanna, Wang, Yao L., Wainner, Richard T., Iftimia, Nicusor V., Gabel, Christopher V., Chung, Samuel H. (2019). Wedge prism approach for simultaneous multichannel microscopy. Scientific Reports, 9(1). 10.1038 / S41598-019-53581-9
  • Cao, Yuansheng, Karmakar, Richa, Ghabache, Elisabeth, Gutierrez, Edgar, Zhao, Yanxiang, Groisman, Alex, Levine, Herbert, Camley, Brian A., Rappel, Wouter-Jan (2019). Cell motility dependence on adhesive wetting. Soft Matter, 15(9), 2043-2050. 10.1039 / C8SM01832D
  • Cassano, Paolo, Tran, Anh Phong, Katnani, Husam, Bleier, Benjamin S., Hamblin, Michael R., Yuan, Yaoshen, Fang, Qianqian (2019). Selective photobiomodulation for emotion regulation: model-based dosimetry study. Neurophotonics, 6(01), 1. 10.1117 / 1.NPH.6.1.015004
  • Chen, Albert Tian, ​​Franks, Alexander, Slavov, Nikolai (2019). DART-ID increases single-cell proteome coverage. PLoS Computational Biology, Jan.(7), e1007082. 10.1371 / JOURNAL.PCBI.1007082
  • Choi, Ki Young, Correa, Santiago, Min, Jouha, Li, Jiahe, Roy, Sweta, Laccetti, Kristiana H., Dreaden, Erik, Kong, Stephanie, Heo, Roun, Roh, Young Hoon, Lawson, Edward C., Palmer, Peter A., ​​Hammond, Paula T. (2019). Binary Targeting of siRNA to Hematologic Cancer Cells In Vivo Using Layer ‐ by ‐ Layer Nanoparticles. Advanced Functional Materials, 29(20), 1900018. 10.1002 / ADFM.201900018
  • Chung, David Y, Sadeghian, Homa, Qin, Tao, Lule, Sevda, Lee, Hang, Karakaya, Fahri, Goins, Stacy, Oka, Fumiaki, Yaseen, Mohammad A., Houben, Thijs, Tolner, Else A, van den Maagdenberg, Arn M J M, Whalen, Michael J, Sakadžić, Sava, Ayata, Cenk (2019). Determinants of Optogenetic Cortical Spreading Depolarizations. Cerebral cortex, 29(3), 1150-1161. 10.1093 / CERCOR / BHY021
  • Draghici, Adina E, Taylor, J Andrew, Bouxsein, Mary L, Shefelbine, Sandra J. (2019). Effects of FES-Rowing Exercise on the Time-Dependent Changes in Bone Microarchitecture After Spinal Cord Injury: A Cross-Sectional Investigation: FES-ROWING ALTERS BONE LOSS AFTER SCI. JBMR Plus, 3rd(9), e10200. 10.1002 / JBM4.10200
  • Emmott, Edward, Jovanovic, Marko, Slavov, Nikolai (2019). Ribosome Stoichiometry: From Form to Function. Trends in Biochemical Sciences, 44(2), 95-109. 10.1016 / J.TIBS.2018.10.009
  • Emmott, Edward, Jovanovic, Marko, Slavov, Nikolai (2019). Approaches for Studying Ribosome Specialization. Trends in Biochemical Sciences, 44(5), 478-479. 10.1016 / J.TIBS.2019.01.008
  • Fang, Qianqian, Yan, Shijie (2019). Graphics processing unit-accelerated mesh-based Monte Carlo photon transport simulations. Journal of Biomedical Optics, 24(11), 1. 10.1117 / 1.JBO.24.11.115002
  • Feng, Jingchen, Levine, Herbert, Mao, Xiaoming, Sander, Leonard M. (2019). Cell motility, contact guidance, and durotaxis. Soft Matter, 15(24), 4856-4864. 10.1039 / C8SM02564A
  • George, Jason T, Levine, Herbert, Molldrem, Jeffrey J., Garber, Haven (2019). Stochastic cancer-immune coevolution: Implications for cancer incidence and immunotherapeutic efficacy. Journal of Clinical Oncology, 37(15_suppl), e14023-e14023. 10.1200 / JCO.2019.37.15_SUPPL.E14023
  • Grath, Alexander, Dai, Guohao (2019). Direct cell reprogramming for tissue engineering and regenerative medicine. Journal of Biological Engineering, 13(1). 10.1186 / S13036-019-0144-9
  • Greene, James M., Gevertz, Jana L., Sontag, Eduardo D. (2019). Mathematical Approach to Differentiate Spontaneous and Induced Evolution to Drug Resistance During Cancer Treatment. JCO Clinical Cancer Informatics, (3), 1-20. 10.1200 / CCI.18.00087
  • Horenstein, Rachel E., Lewis, Cara L., Yan, Sherry, Halverstadt, Anne, Shefelbine, Sandra J. (2019). Validation of magneto-inertial measuring units for measuring hip joint angles. Journal of Biomechanics, 91, 170-174. 10.1016 / J.JBIOMECH.2019.05.029
  • Horn, Andreas, Li, Ningfei, Dembek, Till A., Kappel, Ari, Boulay, Chadwick, Ewert, Siobhan, Tietze, Anna, Husch, Andreas, Perera, Thushara, Neumann, Wolf-Julian, Reisert, Marco, Si, Slope, Oostenveld, Robert, Rorden, Christopher, Yeh, Fang-Cheng, Fang, Qianqian, Herrington, Todd M., Vorwerk, Johannes, Kühn, Andrea A. (2019). Lead-DBS v2: Towards a comprehensive pipeline for deep brain stimulation imaging. NeuroImage, 184, 293-316. 10.1016 / J.NEUROIMAGE.2018.08.068
  • Huffman, R. Gray, Chen, Albert, Specht, Harrison, Slavov, Nikolai (2019). DO-MS: Data-Driven Optimization of Mass Spectrometry Methods. Journal of Proteome Research, Jan.(6), 2493-2500. 10.1021 / ACS.JPROTEOME.9B00039
  • Jang, Hyunbum, Banerjee, Avik, Marcus, Kendra, Makowski, Lee, Mattos, Carla, Gaponenko, Vadim, Nussinov, Ruth (2019). The Structural Basis of the Farnesylated and Methylated KRas4B Interaction with Calmodulin. Structure, 27(11), 1647-1659.e4. 10.1016 / J.STR.2019.08.009
  • Jia, Dongya, Li, Xuefei, Bocci, Federico, Tripathi, Shubham, Deng, Youyuan, Jolly, Mohit Kumar, Onuchic, José N., Levine, Herbert (2019). Quantifying Cancer Epithelial-Mesenchymal Plasticity and its Association with Stemness and Immune Response. Journal of Clinical Medicine, 8(5), 725. 10.3390 / JCM8050725
  • Jia, Dongya, Lu, Mingyang, Jung, Kwang Hwa, Park, Jun Hyoung, Yu, Linglin, Onuchic, José N., Kaipparettu, Benny Abraham, Levine, Herbert (2019). Elucidating cancer metabolic plasticity by coupling gene regulation with metabolic pathways. Proceedings of the National Academy of Sciences of the United States of America, 116(9), 3909-3918. 10.1073 / PNAS.1816391116
  • Jia, Dongya, George, Jason T, Tripathi, Satyendra C, Kundnani, Deepali L, Lu, Mingyang, Hanash, Samir M, Onuchic, José N, Jolly, Mohit Kumar, Levine, Herbert (2019). Testing the gene expression classification of the EMT spectrum. Physical Biology, 16(2), 025002. 10.1088 / 1478-3975 / AAF8D4
  • Jia, Wen, Deshmukh, Abhijeet, Mani, Sendurai A, Jolly, Mohit Kumar, Levine, Herbert (2019). A possible role for epigenetic feedback regulation in the dynamics of the epithelial-mesenchymal transition (EMT). Physical Biology, 16(6), 066004. 10.1088 / 1478-3975 / AB34DF
  • Jolly, Mohit Kumar, Ware, Kathryn E., Xu, Shengnan, Gilja, Shivee, Shetler, Samantha, Yang, Yanjun, Wang, Xueyang, Austin, R. Garland, Runyambo, Daniella, Hish, Alexander J., Bartholf DeWitt, Suzanne, George, Jason T., Kreulen, R. Timothy, Boss, Mary-Keara, Lazarides, Alexander L., Kerr, David L., Gerber, Drew G., Sivaraj, Dharshan, Armstrong, Andrew J., Dewhirst, Mark W., Eward, William C., Levine, Herbert, Somarelli, Jason A. (2019). E-Cadherin Represses Anchorage-Independent Growth in Sarcomas through Both Signaling and Mechanical Mechanisms. Molecular Cancer Research, Jan.(6), 1391-1402. 10.1158 / 1541-7786.MCR-18-0763
  • Jolly, Mohit Kumar, Somarelli, Jason A., Sheth, Maya, Biddle, Adrian, Tripathi, Satyendra C., Armstrong, Andrew J., Hanash, Samir M., Bapat, Sharmila A., Rangarajan, Annapoorni, Levine, Herbert (2019). Hybrid epithelial / mesenchymal phenotypes promote metastasis and therapy resistance across carcinomas. Pharmacology and Therapeutics, 194, 161-184. 10.1016 / J.PHARMTHERA.2018.09.007
  • Josephson, Tyler R., Singh, Ramanish, Minkara, Mona S., Fetisov, Evgenii O., Siepmann, J. Ilja (2019). Partial molar properties from molecular simulation using multiple linear regression. Molecular Physics, 117(23-24),3589-3602. 10.1080/00268976.2019.1648898
  • Kang, Tae-Yun, Bocci, Federico, Jolly, Mohit Kumar, Levine, Herbert, Onuchic, José Nelson, Levchenko, Andre (2019). Pericytes enable effective angiogenesis in the presence of proinflammatory signals. Proceedings of the National Academy of Sciences of the United States of America, 116(47), 23551-23561. 10.1073 / PNAS.1913373116
  • Kirtane, Ameya R., Hua, Tiffany, Hayward, Alison, Bajpayee, Ambika, Wahane, Aniket, Lopes, Aaron, Bensel, Taylor, Ma, Lihong, Stanczyk, Frank Z., Brooks, Sierra, Gwynne, Declan, Wainer, Jacob, Collins, Joy, Tamang, Siddartha M., Langer, Robert, Traverso , Giovanni (2019). A once-a-month oral contraceptive. Science Translational Medicine, 11(521), eaay2602. 10.1126 / SCITRANSLMED.AAY2602
  • Korneva, A., Zilberberg, L., Rifkin, D. B., Humphrey, J. D., Bellini, C. (2019). Absence of LTBP-3 attenuates the aneurysmal phenotype but not spinal effects on the aorta in Marfan syndrome. Biomechanics and Modeling in Mechanobiology, 18(1), 261-273. 10.1007 / S10237-018-1080-1
  • Lee, Wenhan, Hong, Yi, Dai, Guohao (2019). 3D bioprinting of vascular conduits for pediatric congenital heart repairs. Translational Research, 211, 35-45. 10.1016 / J.TRSL.2019.03.007
  • Li, Baoqiang, Esipova, Tatiana V, Sencan, Ikbal, Kılıç, Kıvılcım, Fu, Buyin, Desjardins, Michele, Moeini, Mohammad, Kura, Sreekanth, Yaseen, Mohammad A., Lesage, Frederic, Østergaard, Leif, Devor, Anna, Boas, David A, Vinogradov, Sergei A, Sakadžić, Sava (2019). More homogeneous capillary flow and oxygenation in deeper cortical layers correlate with increased oxygen extraction. eLife, 8. 10.7554 / ELIFE.42299
  • Li, Xuefei, Gruosso, Tina, Zuo, Dongmei, Omeroglu, Atilla, Meterissian, Sarkis, Guiot, Marie-Christine, Salazar, Adam, Park, Morag, Levine, Herbert (2019). Infiltration of CD8 + T cells into tumor cell clusters in triple-negative breast cancer. Proceedings of the National Academy of Sciences of the United States of America, 116(9), 3678-3687. 10.1073 / PNAS.1817652116
  • Li, Xuefei, Jolly, Mohit Kumar, George, Jason T., Pienta, Kenneth J., Levine, Herbert (2019). Computational Modeling of the Crosstalk Between Macrophage Polarization and Tumor Cell Plasticity in the Tumor Microenvironment. Frontiers in Oncology, Dec.. 10.3389 / FONC.2019.00010
  • Lin, Xingcheng, Kulkarni, Prakash, Bocci, Federico, Schafer, Nicholas, Roy, Susmita, Tsai, Min-Yeh, He, Yanan, Chen, Yihong, Rajagopalan, Krithika, Mooney, Steven, Zeng, Yu, Weninger, Keith, Grishaev, Alex, Onuchic, José, Levine, Herbert, Wolynes, Peter, Salgia, Ravi, Rangarajan, Govindan, Uversky, Vladimir, Orban, John, Jolly, Mohit (2019). Structural and Dynamical Order of a Disordered Protein: Molecular Insights into Conformational Switching of PAGE4 at the Systems Level. Biomolecules, 9(2), 77. 10.3390 / BIOM9020077
  • Ludwicki, Morgan B., Li, Jiahe, Stephens, Erin A., Roberts, Richard W., Koide, Shohei, Hammond, Paula T., DeLisa, Matthew P. (2019). Broad-Spectrum Proteome Editing with an Engineered Bacterial Ubiquitin Ligase Mimic. ACS Central Science, . 10.1021 / ACSCENTSCI.9B00127
  • Malioutov, Dmitry, Chen, Tianchi, Airoldi, Edoardo, Jaffe, Jacob, Budnik, Bogdan, Slavov, Nikolai (2019). Quantifying homologous proteins and proteoforms. Molecular and Cellular Proteomics, Jan.(1), 162-168. 10.1074 / MCP.TIR118.000947
  • Margaliot, Michael, Sontag, Eduardo D. (2019). Revisiting totally positive differential systems: A tutorial and new results. Automatica, 101, 1-14. 10.1016 / J.AUTOMATICA.2018.11.016
  • Mehta, Shikhar, Akhtar, Sumayyah, Porter, Ryan M., Önnerfjord, Patrik, Bajpayee, Ambika G. (2019). Interleukin-1 receptor antagonist (IL-1Ra) is more effective in suppressing cytokine-induced catabolism in cartilage-synovium co-culture than in cartilage monoculture. Arthritis Research and Therapy, Dec.(1). 10.1186 / S13075-019-2003-Y
  • Mensah, Lawrence B., Morton, Stephen W., Li, Jiahe, Xiao, Haihua, Quadir, Mohiuddin A., Elias, Kevin M., Penn, Emily, Richson, Aysen K., Ghoroghchian, Paiman Peter, Liu, Joyce, Hammond, Paula T. (2019). Layer ‐ by ‐ layer nanoparticles for novel delivery of cisplatin and PARP inhibitors for platinum ‐ based drug resistance therapy in ovarian cancer. Bioengineering & Translational Medicine, 4(2). 10.1002 / BTM2.10131
  • Mensah, Solomon A., Harding, Ian C., Zhang, Michelle, Jaeggli, Michael P., Torchilin, Vladimir P., Niedre, Mark J., Ebong, Eno E. (2019). Metastatic cancer cell attachment to endothelium is promoted by endothelial glycocalyx sialic acid degradation. AIChE Journal, 65(8th). 10.1002 / AIC.16634
  • Minkara, Mona S., Hembree, Robert H., Jamadagni, Sumanth N., Ghobadi, Ahmad F., Eike, David M., Siepmann, J. Ilja (2019). A new equation of state for homo-polymers in dissipative particle dynamics. The Journal of Chemical Physics, 150(12),124104. 10.1063/1.5058280
  • Mondoñedo, Jarred R., Sato, Susumu, Oguma, Tsuyoshi, Muro, Shigeo, Sonnenberg, Adam H., Zeldich, Dean, Parameswaran, Harikrishnan, Hirai, Toyohiro, Suki, Béla (2019). CT Imaging-Based Low-Attenuation Super Clusters in Three Dimensions and the Progression of Emphysema. Chest, 155(1), 79-87. 10.1016 / J.CHEST.2018.09.014
  • Morales, Jennifer, Pawle, Robert H., Akkilic, Namik, Luo, Yi, Xavierselvan, Marvin, Albokhari, Rayan, Calderon, Isen Andrew C., Selfridge, Scott, Minns, Richard, Takiff, Larry, Mallidi, Srivalleesha, Clark, Heather A. (2019). DNA-Based Photoacoustic Nanosensor for Interferon Gamma Detection. ACS Sensors, 4(5), 1313-1322. 10.1021 / ACSSENSORS.9B00209
  • Nikolaev, Evgeni V., Zloza, Andrew, Sontag, Eduardo D. (2019). Immunobiochemical Reconstruction of Influenza Lung Infection — Melanoma Skin Cancer Interactions. Frontiers in Immunology, Dec.. 10.3389 / FIMMU.2019.00004
  • Nwotchouang, Blaise Simplice Talla, Eppelheimer, Maggie S., Bishop, Paul, Biswas, Dipankar, Andronowski, Janna M., Bapuraj, Jayapalli R., Frim, David, Labuda, Rick, Amini, Rouzbeh, Loth, Francis (2019). Three-Dimensional CT Morphometric Image Analysis of the Clivus and Sphenoid Sinus in Chiari Malformation Type I. Annals of Biomedical Engineering, 47(11), 2284-2295. 10.1007 / S10439-019-02301-5
  • Oakes, Jessica M., Mummy, David G., Poorbahrami, Kamran, Zha, Wei, Fain, Sean B. (2019).Patient-Specific Computational Simulations of Hyperpolarized 3He MRI Ventilation Defects in Healthy and Asthmatic Subjects. IEEE Transactions on Biomedical Engineering, 66(5), 1318-1327. 10.1109 / TBME.2018.2872845
  • Oakes, Jessica M., Shadden, Shawn C. (2019). Response to the Letter to the Editor "Airflow Simulation in Pulmonary Conducting Airways" by M. Monjezi and H. Jamaati. Annals of Biomedical Engineering, 47(12), 2355-2355. 10.1007 / S10439-019-02385-Z
  • Paten, Jeffrey A., Martin, Cassandra L., Wanis, Jamil T., Siadat, Seyed Mohammad, Figueroa-Navedo, Amanda M., Ruberti, Jeffrey W., Deravi, Leila F. (2019). Molecular Interactions between Collagen and Fibronectin: A Reciprocal Relationship that Regulates De Novo Fibrillogenesis. Chem, 5(8), 2126-2145. 10.1016 / J.CHEMPR.2019.05.011
  • Patil, Pritam S., Fathollahipour, Shahrzad, Inmann, Andreas, Pant, Anup, Amini, Rouzbeh, Shriver, Leah P., Leipzig, Nic D. (2019). Fluorinated Methacrylamide Chitosan Hydrogel Dressings Improve Regenerated Wound Tissue Quality in Diabetic Wound Healing. Advances in Wound Care, Aug.(8), 374-385. 10.1089 / WOUND.2018.0887
  • Patil, Roshani, Tan, Xuefei, Bartosik, Peter, Detappe, Alexandre, Runnels, Judith M., Ghobrial, Irene, Lin, Charles P., Niedre, Mark (2019). Fluorescence monitoring of rare circulating tumor cell and cluster dissemination in a multiple myeloma xenograft model in vivo. Journal of Biomedical Optics, 24(08), 1. 10.1117 / 1.JBO.24.8.085004
  • Piet, Judith, Hu, Dorothy, Meslier, Quentin, Baron, Roland, Shefelbine, Sandra J. (2019). Increased Cellular Presence After Sciatic Neurectomy Improves the Bone Mechano-adaptive Response in Aged Mice. Calcified Tissue International, 105(3), 316-330. 10.1007 / S00223-019-00572-7
  • Piet, Judith, Adamo, Sarah, Hu, Dorothy, Baron, Roland, Shefelbine, Sandra J. (2019). Marrow aspiration in aged mice: intramedullary osteogenesis, reduced mechano-adaptation, increased marrow fat. Connective Tissue Research, ,1-15. 10.1080/03008207.2019.1698557
  • Piet, Judith, Hu, Dorothy, Baron, Roland, Shefelbine, Sandra J. (2019). Bone adaptation compensates resorption when sciatic neurectomy is followed by low magnitude induced loading. Bone, 120, 487-494. 10.1016 / J.BONE.2018.12.017
  • Polio, Samuel R., Stasiak, Suzanne E., Jamieson, Ryan R., Balestrini, Jenna L., Krishnan, Ramaswamy, Parameswaran, Harikrishnan (2019). Extracellular matrix stiffness regulates human airway smooth muscle contraction by altering the cell-cell coupling. Scientific Reports, 9(1). 10.1038 / S41598-019-45716-9
  • Poorbahrami, Kamran, Oakes, Jessica M. (2019). Regional flow and deposition variability in adult female lungs: A numerical simulation pilot study. Clinical Biomechanics, 66, 40-49. 10.1016 / J.CLINBIOMECH.2017.12.014
  • Poorbahrami, Kamran, Mummy, David G., Fain, Sean B., Oakes, Jessica M. (2019). Patient-Specific Modeling of Aerosol Delivery in Healthy and Asthmatic Adults. Journal of Applied Physiology, 127(6), 1720-1732. 10.1152 / JAPPLPHYSIOL.00221.2019
  • Rashidi, Neda, Thomas, Vineet S., Amini, Rouzbeh (2019). Theoretical Assessment of the Risk of Ocular Hypotony in Patients With Intravitreal Gas Bubbles Who Travel Through Subsea Tunnels. Translational Vision Science & Technology, 8(1), 4. 10.1167 / TVST.8.1.4
  • Roig-Solvas, Biel, Makowski, Lee, Brooks, Dana H. (2019). A Proximal Operator for Multispectral Phase Retrieval Problems. SIAM Journal on Optimization, 29(4), 2594-2607. 10.1137 / 18M120227X
  • Roig-Solvas, Biel, Brooks, Dana, Makowski, Lee (2019). A direct approach to estimate the anisotropy of protein structures from small-angle X-ray scattering. Journal of Applied Crystallography, 52(2), 274-283. 10.1107 / S1600576719000918
  • Rong, Guoxin, Tuttle, Erin E., Clark, Heather A., Neal Reilly, Ashlyn (2019). Recent Developments in Nanosensors for Imaging Applications in Biological Systems. The Annual Review of Analytical Chemistry, Dec.(1), 109-128. 10.1146 / ANNUREV-ANCHEM-061417-125747
  • Rouhanifard, Sara H., Mellis, Ian A, Dunagin, Margaret, Bayatpour, Sareh, Jiang, Connie L, Dardani, Ian, Symmons, Orsolya, Emert, Benjamin, Torre, Eduardo, Cote, Allison, Sullivan, Alessandra, Stamatoyannopoulos, John A, Raj, Arjun (2019). ClampFISH detects individual nucleic acid molecules using click chemistry-based amplification. Nature Biotechnology, 37(1), 84-89. 10.1038 / NBT.4286
  • Sadeghi, Mahdiar, Al-Radhawi, M. Ali, Margaliot, Michael, Sontag, Eduardo D. (2019). No Switching Policy Is Optimal for a Positive Linear System With a Bottleneck Entrance. IEEE Control Systems Letters, 3(4), 889-894. 10.1109 / LCSYS.2019.2918757
  • Salinas, Samuel D., Clark, Margaret M., Amini, Rouzbeh (2019). Mechanical Response Changes in Porcine Tricuspid Valve Anterior Leaflet Under Osmotic-Induced Swelling. Bioengineering, 6(3), 70. 10.3390 / BIOENGINEERING6030070
  • Sarkar, Sukanta, Sinha, Sudipta Kumar, Levine, Herbert, Jolly, Mohit Kumar, Dutta, Partha Sharathi (2019). Anticipating critical transitions in epithelial-hybrid-mesenchymal cell-fate determination. Proceedings of the National Academy of Sciences of the United States of America, 116(52), 26343-26352. 10.1073 / PNAS.1913773116
  • Shaffer, Robert, DeMaria, Anthony M., Kagermazova, Larisa, Liu, Yuekun, Babaei, Milad, Caban-Penix, Suhaily, Cervantes, Arisdelsy, Jehle, Stefan, Makowski, Lee, Gilmore, Thomas D., Whitty, Adrian, Allen, Karen N. (2019). A Central Region of NF-κB Essential Modulator Is Required for IKKβ-Induced Conformational Change and for Signal Propagation. Biochemistry, 58(26), 2906-2920. 10.1021 / ACS.BIOCHEM.8B01316
  • Shinde, Aparna, Hardy, Shana D., Kim, Dongwook, Akhand, Saeed Salehin, Jolly, Mohit Kumar, Wang, Wen-Hung, Anderson, Joshua C., Khodadadi, Ryan B., Brown, Wells S., George, Jason T., Liu, Sheng, Wan, Jun, Levine, Herbert, Willey, Christopher D., Krusemark, Casey J., Geahlen, Robert L., Wendt, Michael K. (2019). Spleen Tyrosine Kinase - Mediated Autophagy Is Required for Epithelial - Mesenchymal Plasticity and Metastasis in Breast Cancer. Cancer Research, 79(8), 1831-1843. 10.1158 / 0008-5472.CAN-18-2636
  • Song, Wei, Chiu, Alan, Wang, Long-Hai, Schwartz, Robert E., Li, Bin, Bouklas, Nikolaos, Bowers, Daniel T., An, Duo, Cheong, Soon Hon, Flanders, James A., Pardo , Yehudah, Liu, Qingsheng, Wang, Xi, Lee, Vivian K., Dai, Guohao, Ma, Minglin (2019). Engineering transferrable microvascular meshes for subcutaneous islet transplantation. Nature Communications, 10(1). 10.1038 / S41467-019-12373-5
  • Tan, Xuefei, Patil, Roshani, Bartosik, Peter, Runnels, Judith M., Lin, Charles P., Niedre, Mark (2019). In Vivo Flow Cytometry of Extremely Rare Circulating Cells. Scientific Reports, 9(1). 10.1038 / S41598-019-40143-2
  • Thangavel, Hariprasad, Angelis, Carmine De, Vasaikar, Suhas, Bhat, Raksha, Jolly, Mohit Kumar, Nagi, Chandandeep, Creighton, Chad J., Chen, Fengju, Dobrolecki, Lacey E., George, Jason T., Kumar, Tanya, Abdulkareem, Noor Mazin, Mao, Sufeng, Nardone, Agostina, Rimawi, Mothaffar, Osborne, C. Kent, Lewis, Michael T., Levine, Herbert, Zhang, Bing, Schiff, Rachel, Giuliano, Mario, Trivedi, Meghana V. (2019). A CTC-Cluster-Specific Signature Derived from OMICS Analysis of Patient-Derived Xenograft Tumors Predicts Outcomes in Basal-Like Breast Cancer. Journal of Clinical Medicine, 8(11), 1772. 10.3390 / JCM8111772
  • Thomas, Vineet S., Lai, Victor, Amini, Rouzbeh (2019). A Computational Multi-scale Approach to Investigate Mechanically-Induced Changes in Tricuspid Valve Anterior Leaflet Microstructure. Acta Biomaterialia, 94, 524-535. 10.1016 / J.ACTBIO.2019.05.074
  • Vedadghavami, Armin, Wagner, Erica K., Mehta, Shikhar, He, Tengfei, Zhang, Chenzhen, Bajpayee, Ambika G. (2019). Cartilage penetrating cationic peptide carriers for applications in drug delivery to avascular negatively charged tissues. Acta Biomaterialia, 93, 258-269. 10.1016 / J.ACTBIO.2018.12.004
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  • Cheng, Ming J, Bal, Nandita N., Prabakaran, Priya, Kumar, Rajiv, Webster, Thomas J., Sridhar, Srinivas, Ebong, Eno E. (2019). Ultrasmall gold nanorods: synthesis and glycocalyx-related permeability in human endothelial cells. International Journal of Nanomedicine, Volume 14, 319-333. 10.2147 / IJN.S184455
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  • Chung, Stanley, Roy, Amit K, Webster, Thomas J. (2019). Selenium Nanoparticle Protection of Fibroblast Stress: Activation of ATF4 and Bcl-xL Expression. International Journal of Nanomedicine, Volume 14, 9995-10007. 10.2147 / IJN.S172236
  • Cogswell, Christopher F., Nigl, Thomas P., Stavola, Alyssa, Wolek, Andrew, Wang, Yuanci, Zummo, Jillian, Lin, Yang, Dukaye, Liah, Chinn, Rebeccah, Choi, Sunho (2019). Generation and use of a pure titanium pillared MCM-36 structure as a high efficiency carbon dioxide capture platform and amine loaded solid adsorbent. Microporous and Mesoporous Materials, 280, 151-156. 10.1016 / J.MICROMESO.2019.01.040
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  • De-Paula, Mirian Michelle Machado, Afewerki, Samson, Viana, Bartolomeu Cruz, Webster, Thomas Jay, Lobo, Anderson Oliveira, Marciano, Fernanda Roberta (2019). Dual effective core-shell electrospun scaffolds: Promoting osteoblast maturation and reducing bacteria activity. Materials Science and Engineering C, 103, 109778. 10.1016 / J.MSEC.2019.109778
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  • Guo, Peng, Yang, Jiang, Liu, Daxing, Huang, Lan, Fell, Gillian, Huang, Jing, Moses, Marsha A., Auguste, Debra T. (2019). Dual complementary liposomes inhibit triple-negative breast tumor progression and metastasis. Science Advances, 5(3), eaav5010. 10.1126 / SCIADV.AAV5010
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  • Kalantari, Katayoon, Afifi, Amalina M., Jahangirian, Hossein, Webster, Thomas J. (2019). Biomedical applications of chitosan electrospun nanofibers as a green polymer - Review. Carbohydrate Polymers, 207, 588-600. 10.1016 / J.CARBPOL.2018.12.011
  • Kanetkar, N., Ekenseair, A.K. (2019). Scaffolds for Intestinal Tissue Engineering. Handbook of Tissue Engineering Scaffolds: Volume 2, Woodhead, pp. 593-632 (2019), ISBN: 9780081025611.
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  • Lejeune, B. T., Schlagel, D. L., Jensen, B. A., Lograsso, T. A., Kramer, M. J., Lewis, L. H. (2019). Effects of Al and Fe solubility on the magnetofunctional properties of AlFe 2 B 2. Physical Review Materials, 3(9). 10.1103 / PHYSREVMATERIALS.3.094411
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  • Li, Wei, Gong, Kaizheng, Ding, Yuan, Chaurasiya, Birendra, Ni, Yue, Wu, Yong, Zhao, Pei, Shen, Yan, Zhang, Zhengang, Webster, Thomas J. (2019). Effects of triptolide and methotrexate nanosuspensions on left ventricular remodeling in autoimmune myocarditis rats. International Journal of Nanomedicine, Volume 14, 851-863. 10.2147 / IJN.S191267
  • Liu, Hongfei, Zhu, Jie, Bao, Pengyue, Ding, Yueping, Shen, Yan, Webster, Thomas J., Xu, Ying (2019). Construction and in vivo / in vitro evaluation of a nanoporous ion-responsive targeted drug delivery system for recombinant human interferon α-2b delivery. International Journal of Nanomedicine, Volume 14, 5339-5353. 10.2147 / IJN.S209646
  • Liu, Hongfei, Mei, Jiaao, Xu, Ying, Tang, Lei, Chen, Daquan, Zhu, Yating, Huang, Shuguang, Webster, Thomas J., Ding, Hui (2019). Improving The Oral Absorption Of Nintedanib By A Self-Microemulsion Drug Delivery System: Preparation And In Vitro / In Vivo Evaluation. International Journal of Nanomedicine, Volume 14, 8739-8751. 10.2147 / IJN.S224044
  • Liu, Minchao, Sun, Xiangyu, Liao, Zhihui, Li, Yahui, Qi, Xiaoliang, Qian, Yuna, Fenniri, Hicham, Zhao, Ping, Shen, Jianliang (2019). Zinc oxide end-capped Fe 3 O 4 @mSiO 2 core-shell nanocarriers as targeted and responsive drug delivery system for chemo- / ions synergistic therapeutics. Drug delivery, 26(1),732-743. 10.1080/10717544.2019.1642419
  • Lodaya, Rushit N., Kanitkar, Amey P., Friedrich, Kristian, Henson, Dawn, Yamagata, Ryan, Nuti, Sandra, Mallett, Corey P., Bertholet, Sylvie, Amiji, Mansoor M., O’Hagan, Derek T. (2019). Formulation Design, Optimization and In Vivo Evaluations of an α-Tocopherol-Containing Self-Emulsified Adjuvant System using Inactivated Influenza Vaccine. Journal of Controlled Release, 316, 12-21. 10.1016 / J.JCONREL.2019.10.042
  • Lomelí-Marroquín, Diana, Medina Cruz, David, Nieto-Argüello, Alfonso, Vernet Crua, Ada, Chen, Junjiang, Torres-Castro, Alejandro, Webster, Thomas J., Cholula-Díaz, Jorge L (2019). Starch-mediated synthesis of mono- and bimetallic silver / gold nanoparticles as antimicrobial and anticancer agents. International Journal of Nanomedicine, Volume 14, 2171-2190. 10.2147 / IJN.S192757
  • Mackenzie, Gerardo G., Egan, James, Amiji, Mansoor M., Ahmad, Gulzar (2019). DHA-SBT-1214 Taxoid Nanoemulsion and Anti-PD-L1 Antibody Combination Therapy Enhances Antitumor Efficacy in a Syngeneic Pancreatic Adenocarcinoma Model. Molecular Cancer Therapeutics, Jan.(11), 1961-1972. 10.1158 / 1535-7163.MCT-18-1046
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  • Medina-Cruz, David, González, María Ujué, Tien-Street, William, Fernández-Castro, Marcial, Vernet-Crua, Ada, Fernández-Martínez, Iván, Martínez, Lidia, Huttel, Yves, Webster, Thomas J., García-Martín, José Miguel (2019). Synergic antibacterial coatings combining titanium nanocolumns and tellurium nanorods. Nanomedicine: Nanotechnology, Biology, and Medicine, 17, 36-46. 10.1016 / J.NANO.2018.12.009
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  • Miyake, Michelle M., Workman, Alan D., Nocera, Angela L., Wu, Dawei, Mueller, Sarina K., Finn, Kristen, Amiji, Mansoor M., Bleier, Benjamin S. (2019). Discriminant analysis followed by unsupervised cluster analysis including exosomal cystatins predict presence of chronic rhinosinusitis, phenotype, and disease severity. International Forum of Allergy & Rhinology, 9(9), 1069-1076. 10.1002 / ALR.22380
  • Mohamed, Mohamed Alaa, Fallahi, Afsoon, El-Sokkary, Ahmed M.A., Salehi, Sahar, Akl, Magda A., Jafari, Amin, Tamayol, Ali, Fenniri, Hicham, Khademhosseini, Ali, Andreadis, Stelios T., Cheng, Chong (2019). Stimuli-responsive hydrogels for manipulation of cell microenvironment: From chemistry to biofabrication technology. Progress in Polymer Science (Oxford), 98, 101147. 10.1016 / J.PROGPOLYMSCI.2019.101147
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  • Navarro Gallón, Sandra M., Alpaslan, Ece, Wang, Mian, Larese-Casanova, Phillip, Londoño, Martha E., Atehortúa, Lucía, Pavón, Juan J., Webster, Thomas J. (2019). Characterization and study of the antibacterial mechanisms of silver nanoparticles prepared with microalgal exopolysaccharides. Materials Science and Engineering C, 99, 685-695. 10.1016 / J.MSEC.2019.01.134
  • Nocera, Angela L., Mueller, Sarina K., Stephan, Jules R., Hing, Loretta, Seifert, Philip, Han, Xue, Lin, Derrick T., Amiji, Mansoor M., Libermann, Towia, Bleier, Benjamin S. (2019). Exosome swarms eliminate airway pathogens and provide passive epithelial immunoprotection through nitric oxide. Journal of Allergy and Clinical Immunology, 143(4), 1525-1535.e1. 10.1016 / J.JACI.2018.08.046
  • Padmakumar, Smrithi, Paul-Prasanth, Bindhu, Pavithran, Keechilat, Vijaykumar, Dehannathparambil Kottarathil, Rajanbabu, Anupama, Sivanarayanan, Thangalazhi Balakrishnan, Kadakia, Ekta, Amiji, Mansoor M, Nair, Shantikumar V, Menon, Deepthy (2019). Long-term drug delivery using implantable electrospun woven polymeric nanotextiles. Nanomedicine: Nanotechnology, Biology, and Medicine, 15(1), 274-284. 10.1016 / J.NANO.2018.10.002
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  • Rana, Devyesh, Colombani, Thibault, Mohammed, Halimatu S., Eggermont, Loek J., Johnson, Samantha, Annabi, Nasim, Bencherif, Sidi A. (2019). Strategies to prevent dopamine oxidation and related cytotoxicity using various antioxidants and nitrogenation. Emergent Materials, 2(2), 209-217. 10.1007 / S42247-019-00037-5
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  • Rios-Pimentel, Fernando F, Chang, Run, Webster, Thomas Jay, Méndez-González, Magdalena M, García-Rocha, Miguel (2019). Greater osteoblast densities due to the addition of amphiphilic peptide nanoparticles to nano hydroxyapatite coatings. International Journal of Nanomedicine, Volume 14, 3265-3272. 10.2147 / IJN.S189323
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  • Singh, Sima, Hussain, Afzal, Shakeel, Faiyaz, Ahsan, Mohamed Jawed, Alshehri, Sultan, Webster, Thomas, Lal, Uma Ranjan (2019). Recent insights on nanomedicine for augmented infection control. International Journal of Nanomedicine, Volume 14, 2301-2325. 10.2147 / IJN.S170280
  • Slakman, Belinda L., West, Richard H. (2019). Kinetic solvent effects in organic reactions. Journal of Physical Organic Chemistry, 32(3), e3904. 10.1002 / POC.3904
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  • Sousa, Flávia, Dhaliwal, Harkiranpreet Kaur, Gattacceca, Florence, Sarmento, Bruno, Amiji, Mansoor M. (2019). Enhanced anti-angiogenic effects of bevacizumab in glioblastoma treatment upon intranasal administration in polymeric nanoparticles. Journal of Controlled Release, 309, 37-47. 10.1016 / J.JCONREL.2019.07.033
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